[LU-14179] lfs find: error: llapi_semantic_traverse: string buffer too small - Whamcloud Community JIRA

Details

Type: Bug
Resolution: Fixed
Priority: Minor
Fix Version/s: Lustre 2.15.0
Affects Version/s: Lustre 2.12.5
Labels:
None
Environment:
CentOS 7.6 Lustre 2.12.5

Severity:
4
Rank (Obsolete):
9223372036854775807

Description

Running a simple lfs find -i 11 /oak did generate a few of these messages today. I don't know exactly on which files sorry, just wanted to report it as you might be interested to investigate. It's with Lustre 2.12.5 client and server.

Attachments

Activity

[LU-14179] lfs find: error: llapi_semantic_traverse: string buffer too small

Peter Jones added a comment - 22/Mar/21 6:33 PM

Landed for 2.15

Peter Jones added a comment - 22/Mar/21 6:33 PM Landed for 2.15

Gerrit Updater added a comment - 22/Mar/21 4:26 PM

Oleg Drokin (green@whamcloud.com) merged in patch https://review.whamcloud.com/41337/
Subject: ~~LU-14179~~ lfs: avoid lfs find error with long paths
Project: fs/lustre-release
Branch: master
Current Patch Set:
Commit: a6a76df19db61a2015f4cc78f88060f249c955f2

Gerrit Updater added a comment - 22/Mar/21 4:26 PM Oleg Drokin (green@whamcloud.com) merged in patch https://review.whamcloud.com/41337/ Subject: LU-14179 lfs: avoid lfs find error with long paths Project: fs/lustre-release Branch: master Current Patch Set: Commit: a6a76df19db61a2015f4cc78f88060f249c955f2

Gerrit Updater added a comment - 27/Jan/21 10:40 PM

Stephane Thiell (sthiell@stanford.edu) uploaded a new patch: https://review.whamcloud.com/41337
Subject: ~~LU-14179~~ lfs: avoid lfs find error with long paths
Project: fs/lustre-release
Branch: master
Current Patch Set: 1
Commit: 72d703753eda6abe14e7ceae7d973ddeab65b22a

Gerrit Updater added a comment - 27/Jan/21 10:40 PM Stephane Thiell (sthiell@stanford.edu) uploaded a new patch: https://review.whamcloud.com/41337 Subject: LU-14179 lfs: avoid lfs find error with long paths Project: fs/lustre-release Branch: master Current Patch Set: 1 Commit: 72d703753eda6abe14e7ceae7d973ddeab65b22a

Andreas Dilger added a comment - 24/Jan/21 9:15 AM

Feel free to put that into a patch, ideally with a test case.

Fir the user's sake, they should probably fix their application to avoid creating a directory like that.

Andreas Dilger added a comment - 24/Jan/21 9:15 AM Feel free to put that into a patch, ideally with a test case. Fir the user's sake, they should probably fix their application to avoid creating a directory like that.

Stephane Thiell added a comment - 24/Jan/21 2:43 AM - edited

Hi Andreas,

We hit this (minor) problem again on another directory tree when using lfs find. Like the first time, the root cause is clearly a bug in the user's application or script, as the path has a repetitive pattern in it. However, sometimes, surprisingly, we found valid files at the very end of the path, whose absolute paths are above 4096 bytes, so could be useful if lfs find does actually report all of them (eg. when we want to empty an OST and make sure no files are remaining on it). I tried your simple patch to avoid lfs find failure and I confirm it's working to get rid of the error.

Alternatively, one could decide that this error is actually valid and properly reported, and that these paths should be fixed first, as they are indeed too long for PATH_MAX. In that case, I think it would be nice to add the path of the directory to the error message, otherwise currently it's difficult to identify these long paths; something simple like this does seem to work for me:

@@ -2014,8 +2014,8 @@ static int llapi_semantic_traverse(char *path, int size, DIR *parent,
                path[len] = 0;
                if ((len + dent->d_reclen + 2) > size) {
                        llapi_err_noerrno(LLAPI_MSG_ERROR,
-                                         "error: %s: string buffer too small",
-                                         __func__);
+                                         "error: %s: string buffer too small for %s",
+                                         __func__, path);
                        break;
                }
                strcat(path, "/");

Stephane Thiell added a comment - 24/Jan/21 2:43 AM - edited Hi Andreas, We hit this (minor) problem again on another directory tree when using lfs find . Like the first time, the root cause is clearly a bug in the user's application or script, as the path has a repetitive pattern in it. However, sometimes, surprisingly, we found valid files at the very end of the path, whose absolute paths are above 4096 bytes, so could be useful if lfs find does actually report all of them (eg. when we want to empty an OST and make sure no files are remaining on it). I tried your simple patch to avoid lfs find failure and I confirm it's working to get rid of the error. Alternatively, one could decide that this error is actually valid and properly reported, and that these paths should be fixed first, as they are indeed too long for PATH_MAX. In that case, I think it would be nice to add the path of the directory to the error message, otherwise currently it's difficult to identify these long paths; something simple like this does seem to work for me: @@ -2014,8 +2014,8 @@ static int llapi_semantic_traverse(char *path, int size, DIR *parent, path[len] = 0; if ((len + dent->d_reclen + 2) > size) { llapi_err_noerrno(LLAPI_MSG_ERROR, - "error: %s: string buffer too small", - __func__); + "error: %s: string buffer too small for %s", + __func__, path); break; } strcat(path, "/");

Peter Jones added a comment - 14/Dec/20 8:26 PM

Fine with me to reopen

Peter Jones added a comment - 14/Dec/20 8:26 PM Fine with me to reopen

Andreas Dilger added a comment - 14/Dec/20 8:24 PM

I wouldn't mind keeping this open as a low-priority ticket to fix this issue, unless that messes with Peter's issue tracking, in which case I'll open a separate LU ticket.

I think the GNU tools work around this limitation by changing into a subdirectory and then using a relative pathname to keep the path shorter than PATH_MAX. It looks like increasing the userspace buffer size for the ioctl() is fairly easily done, but I haven't checked what else would be needed (if anything) to make this work. Obviously, we can't increase PATH_MAX everywhere, but very few places actually need a full pathname, only the relative pathname is enough. Symlinks couldn't be larger than what ldiskfs can store (blocksize - 1 = 4095). We already have to split fid2path into chunks for DNE to handle crossing MDT boundaries, so we might be able to do the same thing for long pathnames (just return the partial pathname and let the client stitch it together.

That said, it looks to me like the user with the very long pathnames has a bug in their application, since it is creating such deep pathnames with a repeating pattern "call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/...".

Andreas Dilger added a comment - 14/Dec/20 8:24 PM I wouldn't mind keeping this open as a low-priority ticket to fix this issue, unless that messes with Peter's issue tracking, in which case I'll open a separate LU ticket. I think the GNU tools work around this limitation by changing into a subdirectory and then using a relative pathname to keep the path shorter than PATH_MAX . It looks like increasing the userspace buffer size for the ioctl() is fairly easily done, but I haven't checked what else would be needed (if anything) to make this work. Obviously, we can't increase PATH_MAX everywhere, but very few places actually need a full pathname, only the relative pathname is enough. Symlinks couldn't be larger than what ldiskfs can store (blocksize - 1 = 4095). We already have to split fid2path into chunks for DNE to handle crossing MDT boundaries, so we might be able to do the same thing for long pathnames (just return the partial pathname and let the client stitch it together. That said, it looks to me like the user with the very long pathnames has a bug in their application, since it is creating such deep pathnames with a repeating pattern " call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/... ".

Peter Jones added a comment - 14/Dec/20 5:01 AM

ok - thanks Stephane

Peter Jones added a comment - 14/Dec/20 5:01 AM ok - thanks Stephane

Stephane Thiell added a comment - 13/Dec/20 10:47 PM - edited

I just noticed a slight difference in behavior: if I run a (lfs) find using the parent directory, even with your patch Andreas, find works but lfs find reports an error. It might be absolutely OK as we're beyond PATH_MAX anyway.

[root@oak-h01v08 ~]# find $(dirname $path)
/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac
/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8
[root@oak-h01v08 ~]# echo $?
0
[root@oak-h01v08 ~]# 
[root@oak-h01v08 ~]# 
[root@oak-h01v08 ~]# 
[root@oak-h01v08 ~]# lfs find $path
lfs find: Path name '/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8' is too long: Invalid argument (22)
error: find failed for /oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8.
[root@oak-h01v08 ~]# echo $?
22

Stephane Thiell added a comment - 13/Dec/20 10:47 PM - edited I just noticed a slight difference in behavior: if I run a (lfs) find using the parent directory, even with your patch Andreas, find works but lfs find reports an error. It might be absolutely OK as we're beyond PATH_MAX anyway. [root@oak-h01v08 ~]# find $(dirname $path) /oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac /oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8 [root@oak-h01v08 ~]# echo $? 0 [root@oak-h01v08 ~]# [root@oak-h01v08 ~]# [root@oak-h01v08 ~]# [root@oak-h01v08 ~]# lfs find $path lfs find: Path name '/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8' is too long: Invalid argument (22) error: find failed for /oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8. [root@oak-h01v08 ~]# echo $? 22

Stephane Thiell added a comment - 13/Dec/20 10:38 PM

Hello! Actually, it looks like we have a few paths that are > 4096 bytes in length. So I guess we can close this ticket as not being a bug in lfs at all. I'm a bit surprised that users can create such long paths which might break sysadmin commands, but at least there is a way to detect them thanks to such error. Thank you both for having a look at this and sorry for the noise!

A few commands with one of the very long paths:

[root@oak-h01v08 ~]# path=/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8
[root@oak-h01v08 ~]# echo $path | wc
      1       1    4107
[root@oak-h01v08 ~]# cd $path
-bash: cd: /oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8: File name too long
[root@oak-h01v08 ~]# cd $(dirname $path)
[root@oak-h01v08 atac]# pwd | wc
      1       1    4070
[root@oak-h01v08 atac]# cd e489978a-965b-4848-8a75-997f2f90e3f8/
[root@oak-h01v08 e489978a-965b-4848-8a75-9]# pwd | wc
      1       1    4107

Both `find` and `lfs find` are reporting the same error:

[root@oak-h01v08 ~]# find $path
find: ‘/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8’: File name too long
[root@oak-h01v08 ~]# 
[root@oak-h01v08 ~]# 
[root@oak-h01v08 ~]# lfs find $path
lfs find: Path name '/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8' is too long: Invalid argument (22)
error: find failed for /oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8.

Stephane Thiell added a comment - 13/Dec/20 10:38 PM Hello! Actually, it looks like we have a few paths that are > 4096 bytes in length. So I guess we can close this ticket as not being a bug in lfs at all. I'm a bit surprised that users can create such long paths which might break sysadmin commands, but at least there is a way to detect them thanks to such error. Thank you both for having a look at this and sorry for the noise! A few commands with one of the very long paths: [root@oak-h01v08 ~]# path=/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8 [root@oak-h01v08 ~]# echo $path | wc 1 1 4107 [root@oak-h01v08 ~]# cd $path -bash: cd: /oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8: File name too long [root@oak-h01v08 ~]# cd $(dirname $path) [root@oak-h01v08 atac]# pwd | wc 1 1 4070 [root@oak-h01v08 atac]# cd e489978a-965b-4848-8a75-997f2f90e3f8/ [root@oak-h01v08 e489978a-965b-4848-8a75-9]# pwd | wc 1 1 4107 Both `find` and `lfs find` are reporting the same error: [root@oak-h01v08 ~]# find $path find: ‘/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8’: File name too long [root@oak-h01v08 ~]# [root@oak-h01v08 ~]# [root@oak-h01v08 ~]# lfs find $path lfs find: Path name '/oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8' is too long: Invalid argument (22) error: find failed for /oak/stanford/scg/lab_bpulend/wimmers/mo_atacScr_v1/cromwell-executions/atac/d40d2b02-4a21-4f6a-a0f5-443e903a40ab/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8/call-trim_adapter/shard-1/inputs/1458923937/mo_atacScr.tmp/cromwell-executions/atac/e489978a-965b-4848-8a75-997f2f90e3f8.

People

Assignee:: Yang Sheng

Reporter:: Stephane Thiell

Votes:: 0 Vote for this issue

Watchers:: 5 Start watching this issue

Dates

Created:: 03/Dec/20 5:24 PM

Updated:: 31/Jul/24 11:26 PM

Resolved:: 22/Mar/21 6:33 PM